{"id":1543917,"date":"2026-03-17T11:54:51","date_gmt":"2026-03-17T10:54:51","guid":{"rendered":"https:\/\/laboklin.com\/new-diagnostic-tests-for-fish-and-reptiles\/"},"modified":"2026-06-01T13:33:09","modified_gmt":"2026-06-01T11:33:09","slug":"new-diagnostic-tests-for-fish-and-reptiles","status":"publish","type":"post","link":"https:\/\/laboklin.com\/dk\/new-diagnostic-tests-for-fish-and-reptiles\/","title":{"rendered":"New Diagnostic Tests for Fish and Reptiles"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row][vc_column width=&#8221;2\/3&#8243;][vc_column_text css=&#8221;&#8221;]<\/p>\n<h2>Columnaris disease in koi and aquarium fish<\/h2>\n<p>The causative agent of columnaris disease is <em>Flavobacterium columnare<\/em>, a bacterium that plays a particularly important role in the ornamental fish trade. <em>Flavobacterium columnare <\/em>is a Gramnegative, rod-shaped bacterium measuring 5\u201312 \u00d7<\/p>\n<p>0.5 \u00b5m. It exhibits slow gliding motility but lacks flagella. <em>Flavobacterium columnare <\/em>has been detected in popular aquarium fish species such as neon tetra (<em>Paracheirodon innesi<\/em>), platy (<em>Xiphophorus maculatus<\/em>) and zebrafish (<em>Danio rerio<\/em>), as well as in pond fish such as koi (<em>Cyprinus carpio<\/em>). In principle, the pathogen can occur in all freshwater fish; however, outbreaks in pond fish are most common during the summer months when water temperatures are higher. Entry points for the pathogen are skin lesions. Infection is further promoted by poor water quality, high ammonia concentrations, elevated pH, and low oxygen levels. Initially, small whitish lesions develop around the mouth, fin margins, and scales, which resemble fungal growth as they enlarge. In scaleless fish such as channel catfish (<em>Ictalurus punctatus<\/em>), the infection begins as small bluish-grey necrotic lesions in the skin with a reddish inflammatory margin.<\/p>\n<p>Microscopically, large numbers of <em>F. columnare <\/em>bacteria can be detected both in the centre and at the wound margins, with the edge often appearing to consist almost entirely of bacterial cells. In fish with scales, lesions may begin at the outer fin margins and spread inwards across the body, giving a saddle-like appearance. This is the origin of the term \u201csaddleback disease\u201d. Initially, degradation of the fin edges occurs, leaving the fin rays exposed.<br \/>\nThe gills may also be affected. In such cases, the gill lamellae disintegrate from the tips towards the gill arches. In juvenile fish, excessive swelling of the gill epithelium and increased mucus production often lead to adhesion of the gill lamellae.<br \/>\nThe consequence is reduced oxygen uptake, resulting in rapid respiratory movements.<\/p>\n<p>Two clinical forms of columnaris disease can be distinguished. In the chronic form, white lesions enlarge slowly and fish die only after a prolonged course of disease. In the acute form, skin lesions spread within hours. Up to 50% of a fish population may die within 36 hours. In experimental infections in zebrafish, characteristic dorsal lesions have been observed as early as 24 hours post infection. Treatment must therefore be initiated rapidly.<\/p>\n<p>Antibiotic treatment based on antibiogram results is generally possible. However, it should always be combined with optimisation of husbandry conditions. As the pathogen prefers an alkaline environment, lowering the pH to 6.8 may support treatment. For diagnosis, a swab is taken from affected body areas. This can be examined both by culture and by PCR. On Anacker\u2013Ordal agar, <em>F. <\/em><em>columnare <\/em>grows as pale yellow colonies at 18\u201330 \u00b0C (Fig. 1), with a tendency to adhere to the agar surface. At temperatures below 14 \u00b0C and above 33 \u00b0C, no growth occurs under culture conditions.[\/vc_column_text][\/vc_column][vc_column width=&#8221;1\/3&#8243;][vc_column_text css=&#8221;&#8221;]<\/p>\n\n\t\t\t<style type='text\/css'>\n\t\t\t\t#gallery-1 {\n\t\t\t\t\tmargin: auto;\n\t\t\t\t}\n\t\t\t\t#gallery-1 .gallery-item {\n\t\t\t\t\tfloat: left;\n\t\t\t\t\tmargin-top: 10px;\n\t\t\t\t\ttext-align: center;\n\t\t\t\t\twidth: 100%;\n\t\t\t\t}\n\t\t\t\t#gallery-1 img {\n\t\t\t\t\tborder: 2px solid #cfcfcf;\n\t\t\t\t}\n\t\t\t\t#gallery-1 .gallery-caption {\n\t\t\t\t\tmargin-left: 0;\n\t\t\t\t}\n\t\t\t\t\/* see gallery_shortcode() in wp-includes\/media.php *\/\n\t\t\t<\/style>\n\t\t<div id='gallery-1' class='dt-gallery-container gallery galleryid-1543917 gallery-columns-1 gallery-size-large'><dl class='gallery-item'>\n\t\t\t\t<dt class='gallery-icon portrait'>\n\t\t\t\t\t<a class=\"rollover rollover-zoom dt-pswp-item\" title=\"\" data-dt-img-description=\"LABOKLIN aktuell Birds\/Reptiles | &lt;b&gt;Fig. 1:&lt;\/b&gt; Flavobacterium columnare colonies on Anacker\u2013Ordal agar\n&lt;br&gt;&lt;i&gt;Picture source: Laboklin&lt;\/i&gt;\" data-large_image_width=\"2000\" data-large_image_height=\"2277\"href='https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"899\" height=\"1024\" src=\"https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-899x1024.jpg\" class=\"attachment-large size-large\" alt=\"Flavobacterium columnare colonies on Anacker\u2013Ordal agar\" aria-describedby=\"gallery-1-1543901\" srcset=\"https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-899x1024.jpg 899w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-264x300.jpg 264w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-768x874.jpg 768w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-1349x1536.jpg 1349w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies-1799x2048.jpg 1799w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Flavobacterium_columnare_colonies.jpg 2000w\" sizes=\"auto, (max-width: 899px) 100vw, 899px\" \/><\/a>\n\t\t\t\t<\/dt>\n\t\t\t\t\t<dd class='wp-caption-text gallery-caption' id='gallery-1-1543901'>\n\t\t\t\t\t<b>Fig. 1:<\/b> Flavobacterium columnare colonies on Anacker\u2013Ordal agar\n<br><i>Picture source: Laboklin<\/i>\n\t\t\t\t\t<\/dd><\/dl><br style=\"clear: both\" \/><dl class='gallery-item'>\n\t\t\t\t<dt class='gallery-icon portrait'>\n\t\t\t\t\t<a class=\"rollover rollover-zoom dt-pswp-item\" title=\"\" data-dt-img-description=\"LABOKLIN aktuell Birds\/Reptiles | &lt;b&gt;Fig. 2:&lt;\/b&gt; Shell lesions caused by Emydomyces testavorans in a freshwater turtle\t&lt;br&gt;&lt;i&gt;Picture source: C. Leineweber&lt;\/i&gt;\" data-large_image_width=\"1920\" data-large_image_height=\"2560\"href='https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-scaled.jpg'><img loading=\"lazy\" decoding=\"async\" width=\"768\" height=\"1024\" src=\"https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-768x1024.jpg\" class=\"attachment-large size-large\" alt=\"Shell lesions caused by Emydomyces testavorans in a freshwater turtle\" aria-describedby=\"gallery-1-1543884\" srcset=\"https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-768x1024.jpg 768w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-225x300.jpg 225w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-1152x1536.jpg 1152w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-1536x2048.jpg 1536w, https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/Shell_lesions_caused_by_Emydomyces_testavorans-scaled.jpg 1920w\" sizes=\"auto, (max-width: 768px) 100vw, 768px\" \/><\/a>\n\t\t\t\t<\/dt>\n\t\t\t\t\t<dd class='wp-caption-text gallery-caption' id='gallery-1-1543884'>\n\t\t\t\t\t<b>Fig. 2:<\/b> Shell lesions caused by Emydomyces testavorans in a freshwater turtle\t<br><i>Picture source: C. Leineweber<\/i>\n\t\t\t\t\t<\/dd><\/dl><br style=\"clear: both\" \/>\n\t\t\t<\/div>\n\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row type=&#8221;vc_default&#8221; css=&#8221;.vc_custom_1657177034207{margin-top: 20px !important;}&#8221;][vc_column][vc_column_text css=&#8221;&#8221;]Cultural examination allows for antimicrobial susceptibility testing (antibiogram). The advantage of PCR lies in a shorter turnaround time and significantly higher sensitivity through DNA detection.<br \/>\nIn addition, a small piece of affected fin tissue can be excised and examined microscopically. This reveals that many columnaris bacteria attach at one end and exhibit oscillating movements with the free end. At the margins of inflamed tissue areas, they aggregaggregate into column-like or cluster-like structures.<\/p>\n<p>&nbsp;<\/p>\n<h2><em>Emydomyces<\/em> <em>testavorans<\/em> \u2013 a cutaneous fungus in turtles<\/h2>\n<p><em>Emydomyces testavorans <\/em>is a keratinophilic fungus found in freshwater turtles. It belongs to the order Onygenales, which also includes other reptile-associated pathogens such as the genera <em>Nannizziopsis, Ophidiomyces <\/em>and <em>Paranannizziopsis<\/em>, all of which are primarily associated with dermatological diseases in various reptile species.<\/p>\n<p><em>Emydomyces testavorans <\/em>was first described in association with ulcerative shell lesions in fresh-water turtles in the western United States (Wood-burn et al. 2019). Since then, it has been detected in several species in North America (Woodburn et al. 2019; Davidson et al. 2025; Brunner et al. 2024; Fredrickson et al. 2024). To date, all research and reported detections of <em>E. testavorans <\/em>originate exclusively from North America, where the fungus has been identified in both zoological collections and wild freshwater turtle populations.<\/p>\n<p>Clinically and pathologically, ulcerative shell lesions are most commonly described (Fig. 2), which may also affect deeper shell structures. In severe cases, epithelial inclusion cysts may develop and extend into deeper tissues; these can be visualised using computed tomography. In milder cases, pale areas on the shell may be observed. Chronic disease courses with slowly progressive shell changes have also been reported. Histologically, affected animals may show squamous epithelial metaplasia, hyperkeratosis, inflammation, and osteonecrosis (Woodburn et al. 2021).<\/p>\n<p>Treatment is challenging and prolonged, and includes antifungal therapy, particularly terbinafine, as well as regular cleaning and disinfection of the environment. Effective disinfectants appear to include chlorine bleach, chlorhexidine, and accelerated hydrogen peroxide (Liszka et al. 2025). Diagnosis of <em>Emydomyces testavorans <\/em>is often difficult. The detection of characteristic inclusion cysts in the shell using computed tomography may indicate infection in severe cases. However, the fungus is difficult to culture and is often overgrown by other environmental or shell-associated fungi in culture. Superficial lesions frequently no longer contain viable fungal elements, and sampling from deeper layers can be challenging.<\/p>\n<p>The recommended sample for pathogen detection by PCR is a combined swab from the oropharynx, cloaca, and shell. A dry swab (without transport medium) should be used. Recently, Laboklin has established a PCR assay for the detection of <em>Emydomyces testavorans<\/em>, making diagnosis of this pathogen possible in Europe. In recent months, several detections have already been made in different freshwater turtles in Germany, indicating that the pathogen is present in Europe and may cause clinical disease.<\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: right;\"><em>Dr. Martin Felten, Dr. Christoph Leineweber,<br \/>\n<\/em><em>Dr. Rachel Marschang<\/em><\/p>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row type=&#8221;vc_default&#8221; gap=&#8221;10&#8243; css=&#8221;.vc_custom_1705914749266{margin-top: 30px !important;}&#8221;][vc_column][vc_column_text css=&#8221;&#8221;]<\/p>\n<h5><strong>Further Reading<\/strong><\/h5>\n<ul>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Untergasser D. Krankheiten der Zierfische. Ettlingen (DE): D\u00e4hne Verlag; 2024.<br \/>\n<\/strong><\/span><span style=\"color: #808080;\"><strong>Buller NB. Bacteria and fungi from fish and other aquatic animals: a practical identification manual. 2nd ed. Oxfordshire (UK): CABI; 2014.<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Simmons A, Brunner T, Ospina E, Wong A, Keller K, Adamovicz L. Emydomyces testavorans DNA is detected from shell swabs of companion chelonians. J Exot Pet Med. 2024;50:49\u201353. doi:10.1053\/j.jepm.2024.05.005.<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Davidson A, Kendall MW, Ryan M, Ladez K, Bradley S, Lionetto C, Graser W, Glowacki G, Thompson D, King RB, Golba CK, Moorhead K, Adamovicz L, Allender MC. Hematology, Plasma Biochemistry, Protein Electrophoresis, and Pathogen Surveillance in Headstarted and Wild-Reared Populations of Blanding\u2018s Turtles (Emydoidea blandingii) in Three Northern Illinois, USA, Counties. J Wildl Dis. 2023 Dec 20;61(1):30-45. doi: 10.7589\/JWD-D-23-00194<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Fredrickson K, Adamovicz L, Terio K, Davidson A, Ryan M, Waligora M, Schroder K, Bradley S, Lionetto C, Andersson K, Engel A, Graser W, Anchor C, Glowacki G, Allender MC. Emydomyces testavorans Surveillance in Multiple Free-Ranging Terrestrial and Aquatic Chelonian Species in Illinois, USA. J Wildl Dis. 2024 Oct 1;60(4):850-859. doi: 10.7589\/JWD-D-23-00164<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Liszka NC, Adamovicz L, Moorhead KA, Daleo MJ, Grochowski K, Allender MC. Evaluating the Efficacy of Disinfectant Methods against Emydomyces testavorans, a Fungus Associated with Shell Disease in Freshwater Aquatic Turtles. J Wildl Dis. 2025 Jan 1;61(1):234-240. doi: 10.7589\/JWD-D-24-00094.<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Woodburn DB, Miller AN, Allender MC, Maddox CW, Terio KA. Emydomyces testavorans, a New Genus and Species of Onygenalean Fungus Isolated from Shell Lesions of Freshwater Aquatic Turtles. J Clin Microbiol. 2019 Jan 30;57(2):e00628-18. doi: 10.1128\/JCM.00628-18<\/strong><\/span><\/h6>\n<\/li>\n<li>\n<h6><span style=\"color: #808080;\"><strong>Woodburn DB, Kinsel MJ, Poll CP, Langan JN, Haman K, Gamble KC, Maddox C, Jeon AB, Wellehan JFX, Ossiboff RJ, Allender MC, Terio KA. Shell Lesions Associated With Emydomyces testavorans Infection in Freshwater Aquatic Turtles. Vet Pathol. 2021 May;58(3):578-586. doi: 10.1177\/0300985820985217<\/strong><\/span><\/h6>\n<\/li>\n<\/ul>\n<p>[\/vc_column_text][\/vc_column][\/vc_row][vc_row type=&#8221;vc_default&#8221; gap=&#8221;10&#8243; equal_height=&#8221;yes&#8221; content_placement=&#8221;middle&#8221; css=&#8221;.vc_custom_1760344428548{margin-top: 30px !important;}&#8221;][vc_column width=&#8221;1\/6&#8243; css=&#8221;.vc_custom_1760343156428{background-color: #E7E7E7 !important;}&#8221;][vc_icon icon_fontawesome=&#8221;fa fa-solid fa-file-pdf&#8221; color=&#8221;custom&#8221; size=&#8221;xl&#8221; align=&#8221;center&#8221; css=&#8221;.vc_custom_1780306503678{margin-top: 10px !important;margin-bottom: 10px !important;padding-top: 20px !important;padding-bottom: 20px !important;}&#8221; custom_color=&#8221;#e51e1e&#8221; link=&#8221;url:https%3A%2F%2Flaboklin.com%2Fwp-content%2Fuploads%2F2026%2F06%2FNew_Diagnostic_Tests_for_Fish_and_Reptiles.pdf|target:_blank&#8221;][\/vc_column][vc_column width=&#8221;5\/6&#8243; css=&#8221;.vc_custom_1760343165360{background-color: #E7E7E7 !important;}&#8221;][vc_column_text css=&#8221;.vc_custom_1780309464641{margin-top: 10px !important;margin-bottom: 0px !important;padding-top: 0px !important;padding-bottom: 0px !important;}&#8221;]<a href=\"https:\/\/laboklin.com\/wp-content\/uploads\/2026\/06\/New_Diagnostic_Tests_for_Fish_and_Reptiles.pdf\" target=\"_blank\" rel=\"noopener\"><strong>New Diagnostic Tests for Fish and Reptiles<\/strong><\/a>[\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>New Laboklin diagnostics for fish and reptiles: Faster PCR testing, precise laboratory analyses, and state-of-the-art methods for veterinarians and pet owners.<\/p>\n","protected":false},"author":30,"featured_media":1543901,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_seopress_robots_primary_cat":"","_seopress_titles_title":"%%post_title%%","_seopress_titles_desc":"%%post_excerpt%%","_seopress_robots_index":"","_seopress_analysis_target_kw":"genetic sex determination,snake,popping,probing,PCR","footnotes":""},"categories":[414],"tags":[],"class_list":["post-1543917","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-laboklin-aktuell-birds-reptiles","category-414","description-off"],"_links":{"self":[{"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/posts\/1543917","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/users\/30"}],"replies":[{"embeddable":true,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/comments?post=1543917"}],"version-history":[{"count":2,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/posts\/1543917\/revisions"}],"predecessor-version":[{"id":1543932,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/posts\/1543917\/revisions\/1543932"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/media\/1543901"}],"wp:attachment":[{"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/media?parent=1543917"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/categories?post=1543917"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/laboklin.com\/dk\/wp-json\/wp\/v2\/tags?post=1543917"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}